diff --git a/drivers/pci/host/pci-mvebu.c b/drivers/pci/host/pci-mvebu.c
index 424a7b8e040f..338691b616d9 100644
--- a/drivers/pci/host/pci-mvebu.c
+++ b/drivers/pci/host/pci-mvebu.c
@@ -662,6 +662,8 @@ static int __init mvebu_pcie_setup(int nr, struct pci_sys_data *sys)
 
 	for (i = 0; i < pcie->nports; i++) {
 		struct mvebu_pcie_port *port = &pcie->ports[i];
+		if (!port->base)
+			continue;
 		mvebu_pcie_setup_hw(port);
 	}